It shouldn't make much difference doing it in different gears. You will find that the high gears will tend to give you a higher flywheel figure, whereas the lower gears will give you a higher wheel figure.
Bertie, I'm not too sure how else to explain it. The VTS should produce its maximum torque at 5200 rpm. Unless you have changed the characteristics of the engine, I woludn't expect it to stray from there by much at all. I suppose an exhaust sytem could affect it a little, but not by much. The first reading is not right at all. It may have been a little spike or something. Check the graph for the first reading, you might see a little spike for the torque where it's been suggested that it's at its maximum.
The power figures are good, and quite realistic. Notice the torque reading. The engine as standard, produces 107 lb/ft of torque, so thats pretty much spot on. Just where it's actually producing it doesn't seem quite right. To put things into perspective, I have different cam shafts to you, I'm using Catcam 708s, which move the power band up in the rev range a fair bit. I produce my maximum torque at around 5500 rpm now, as opposed to 5200.