Using an angle grinder with a wire brush attachment go at the rust and see just how much is missing. Then, there are several ways to cut it out, cut the rust out.
I personally would use a cereal box to make a stencil using scissors. Once the piece fits perfectly use it as a stencil on your 0.8mm plate or whatever your using, then using a magnet to hold the panel in place, tack it on and begin to weld.
Be cautious of heat warping things, melting things, setting fire to things etc.
I would totally strip the back end of the car interior wise to be safe and have a mate with a fire extinguisher loiter around on look out while you weld.